System Grab Bag

View all TLDR pages from Linux (or from all pages)

esearch

Perform a new Entrez search using terms in indexed fields. It is part of the edirect package. More information: https://www.ncbi.nlm.nih.gov/books/NBK179288/.
  • Search the pubmed database for selective serotonin reuptake inhibitor:
    esearch -db pubmed -query "{{selective serotonin reuptake inhibitor}}"
  • Search the protein database using a query and regexp:
    esearch -db {{protein}} -query {{'Escherichia*'}}
  • Search the nucleotide database for sequences whose metadata contain insulin and rodents:
    esearch -db nuccore -query "{{insulin [PROT] AND rodents [ORGN]}}"
  • Display [h]elp:
    esearch -h

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